It’s fine to fully empty the battery occasionally, but if you do it on a regular basis you can shorten the battery’s lifespan, in addition to running other risks.
IBM has some good battery care tips up on their site, along with a warning not to deep-discharge lithium-ion batteries.
Another link
“Manufacturers rate the lithium-ion battery at an 80% depth of discharge. Repeated full (100%) discharges would lower the specified cycle count. It is therefore recommended to charge lithium-ion more often rather than letting it down too low. Periodic full discharges are not needed because lithium-ion is not affected by memory.”
“Some lithium-ion batteries feature an ultra-low voltage cut-off that permanently disconnects the pack if a cell dips below 1.5V. A very deep discharge may cause the formation of copper shunt, which can lead to a partial or total electrical short.”[/url]